DisGeNET - a database of gene-disease associations

List of shared variants

Rheumatoid Arthritis, C0003873

Disease: Lupus Erythematosus, Systemic

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs7775397	TSBP1-AS1 ; TSBP1	0.790	0.400	6	32293475	missense variant	T/G	snv	6.0E-02	6.4E-02	7
rs2076530	TSBP1-AS1 ; BTNL2	0.724	0.640	6	32396039	missense variant	T/C	snv	0.42	0.40	17
rs3115553	TSBP1-AS1	0.851	0.200	6	32278050	intron variant	C/T	snv		0.25	4
rs3117103	TSBP1-AS1	0.925	0.120	6	32381780	intron variant	A/T	snv		9.6E-02	2
rs3130320	TSBP1-AS1	0.851	0.160	6	32255481	intron variant	T/C	snv		0.68	5
rs3130340	TSBP1-AS1	0.851	0.200	6	32276850	intron variant	T/C	snv		0.25	5
rs540386	TRAF6	0.851	0.200	11	36503743	intron variant	C/G;T	snv			4
rs3761847	TRAF1	0.827	0.200	9	120927961	intron variant	G/A	snv		0.52	8
rs1042522	TP53	0.426	0.800	17	7676154	missense variant	G/C;T	snv	0.67		242
rs1131691014	TP53	0.439	0.800	17	7676154	frameshift variant	-/C	ins			214
rs878854066	TP53	0.439	0.800	17	7676153	missense variant	GG/AC	mnv			213
rs1150753	TNXB	0.925	0.120	6	32092090	intron variant	A/G	snv		6.3E-02	2
rs185819	TNXB	0.851	0.200	6	32082290	missense variant	T/A;C;G	snv	8.2E-06; 0.58; 4.1E-06		10
rs2269426	TNXB	0.807	0.280	6	32108722	intron variant	G/A	snv		0.35	10
rs10488631	TNPO3	0.742	0.280	7	128954129	upstream gene variant	T/C	snv		9.0E-02	13
rs12531711	TNPO3	0.827	0.200	7	128977412	intron variant	A/C;G	snv			5
rs13238352	TNPO3	0.827	0.240	7	129007888	intron variant	C/T	snv		9.1E-02	5
rs2280714	TNPO3	0.752	0.440	7	128954671	3 prime UTR variant	C/T	snv		0.64	10
rs4958880	TNIP1	0.851	0.160	5	151058916	intron variant	C/A;G	snv			4
rs1234315	TNFSF4	0.807	0.400	1	173209324	upstream gene variant	C/T	snv		0.57	6
rs3810936	TNFSF15	0.742	0.320	9	114790605	synonymous variant	T/C	snv	0.71	0.75	12
rs6478109	TNFSF15	0.752	0.320	9	114806486	upstream gene variant	A/G	snv		0.74	12
rs7848647	TNFSF15	0.732	0.320	9	114806766	upstream gene variant	T/C	snv		0.74	13
rs1061622	TNFRSF1B	0.633	0.760	1	12192898	missense variant	T/G	snv	0.22	0.22	33
rs61756766	TNFRSF13C	0.776	0.320	22	41925447	missense variant	G/A	snv	5.7E-03	5.7E-03	9